No problem.
As long as you don’t have lots of noise in the individual frames to get rid of by stacking lots (reducing gain will help that), I think by stacking lots of frames you are not making sure you are including good data as suggested, you are actually making sure the stack is worse by including many poor quality frames. However good the seeing is, with daytime seeing you are only ever going to get a tiny percentage of the time during the capture where there is truly good seeing. Keeping the number of frames in the stack to the minimum required to control the noise therefore ensures only the best frames go into the stack. I would determine how many frames you need to stack to control the noise from any given gain and then just stick to that number regardless of how long the AVI is. I always stack a set number, not a percentage. I would never stack more than 150 even from a ~3,000 frame AVI and try to keep it nearer 100 as said above.
I should probably get my captures from earlier processed and posted so that you can look and decide if I know what I’m talking about!!