Just to follow up on this and let this be here to help anyone else that's been having this issue.
I did go out Friday night to test the 14" Skyliner again and I found an option in the settings of the app - "Settings - Auxiliary Encoder" - and was just a matter of turning it on and I was able to then do a two start alignment (I did try three star alignments before but the mount doesn't seem to like it much as the accuracy is not good) and every object I did GOTO on was bang on in the eyepiece. I then manually slewed the scope to the opposite side of the sky and then used the phone app to center the object, I also pressed on the "Identify" option in "Utility" and it showed me to be where I pointed the scope. So, I went back to GOTO and it was flawless, just as good, if not slightly better, than the hand controller now.
Feeling elated by this I went an got my Chromebook - which I have Stellarium Plus on - and thought I would try connecting that to the WiFi dongle and to my astonishment it connected instantly and was having great fun picking objects and watching it all happen. I used to do this on the EQ6 Pro via Starry Night Pro using a long RS232 to USB cable and it worked really well but all those wires and feeling restricted, I seldom used it. This being all wireless I can flip my Chromebook into tablet mode and just hold it and walk around. This won't be something I use for my own observing sessions but will be a great gimmick and bit of fun for public events and public star parties.