Hi Paul,
I've have only ever used homemade baader film filters prior to buying a Herschel Wedge, though I still have several in use for cameras as well as 'scopes. I can only assume that by 'indentations' you are referring to small rucks or creases where the film is not stretched taut to produce a mirror like flatness (?). If so, then there is nothing to be too concerned about. My own filters tend to look like that too - a kind of exaggerated version of the image in the link that you posted. Pin holes are what you need to worry about! Holding the filter between your eyes and a ( lit ) lightbulb and checking carefully for holes (as you appear to have already done) is the way to check it. If there are none, I wouldn't worry. If there are, and the filter was purchased 'new' then it is covered under the Sale of Goods Act and will be replaced/refunded as faulty, but I would expect that to be VERY unlikely to arise. It IS daunting, using a film filter for the first time, and it's good that you're being careful. I remember being a bit sureprised when I saw my first film filter - i had expected it to be 'stretched taut' - but they're generally far from it! Heck, I even got nervous the first time I looked through a Coronado Solarmax 'scope !!